Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY21023.1 | AFY21033.1 | PputUW4_03831 | PputUW4_03841 | Hypothetical protein. | Hypothetical protein. | 0.441 |
AFY21023.1 | ccmA | PputUW4_03831 | PputUW4_03840 | Hypothetical protein. | Cytochrome c biogenesis protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.617 |
AFY21023.1 | ccmB | PputUW4_03831 | PputUW4_03839 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.617 |
AFY21023.1 | ccmC | PputUW4_03831 | PputUW4_03838 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.784 |
AFY21023.1 | ccmD | PputUW4_03831 | PputUW4_03837 | Hypothetical protein. | Cytochrome c-type biogenesis protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.784 |
AFY21023.1 | ccmE | PputUW4_03831 | PputUW4_03836 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.784 |
AFY21023.1 | ccmF | PputUW4_03831 | PputUW4_03835 | Hypothetical protein. | [O] COG1138 Cytochrome c biogenesis factor. | 0.784 |
AFY21023.1 | ccmH | PputUW4_03831 | PputUW4_03833 | Hypothetical protein. | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | 0.784 |
AFY21023.1 | cycH | PputUW4_03831 | PputUW4_03832 | Hypothetical protein. | [O] COG4235 Cytochrome c biogenesis factor. | 0.785 |
AFY21023.1 | dsbE2 | PputUW4_03831 | PputUW4_03834 | Hypothetical protein. | Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. | 0.784 |
AFY21033.1 | AFY21023.1 | PputUW4_03841 | PputUW4_03831 | Hypothetical protein. | Hypothetical protein. | 0.441 |
AFY21033.1 | ccmA | PputUW4_03841 | PputUW4_03840 | Hypothetical protein. | Cytochrome c biogenesis protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.570 |
AFY21033.1 | ccmB | PputUW4_03841 | PputUW4_03839 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.570 |
AFY21033.1 | ccmC | PputUW4_03841 | PputUW4_03838 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.472 |
AFY21033.1 | ccmD | PputUW4_03841 | PputUW4_03837 | Hypothetical protein. | Cytochrome c-type biogenesis protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.549 |
AFY21033.1 | ccmE | PputUW4_03841 | PputUW4_03836 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.472 |
AFY21033.1 | ccmF | PputUW4_03841 | PputUW4_03835 | Hypothetical protein. | [O] COG1138 Cytochrome c biogenesis factor. | 0.472 |
AFY21033.1 | ccmH | PputUW4_03841 | PputUW4_03833 | Hypothetical protein. | Cytochrome C biogenesis protein; Possible subunit of a heme lyase. | 0.472 |
AFY21033.1 | cycH | PputUW4_03841 | PputUW4_03832 | Hypothetical protein. | [O] COG4235 Cytochrome c biogenesis factor. | 0.472 |
AFY21033.1 | dsbE2 | PputUW4_03841 | PputUW4_03834 | Hypothetical protein. | Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. | 0.472 |
page 1 of 6