Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17321.1 | AFY17322.1 | PputUW4_00112 | PputUW4_00113 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | Hypothetical protein. | 0.718 |
AFY17321.1 | AFY17323.1 | PputUW4_00112 | PputUW4_00115 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | [MU] COG1538 Outer membrane protein. | 0.676 |
AFY17321.1 | AFY17324.1 | PputUW4_00112 | PputUW4_00116 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | Type I secretion system ATPase family protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. | 0.655 |
AFY17321.1 | AFY17325.1 | PputUW4_00112 | PputUW4_00117 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | [M] COG0845 Membrane-fusion protein. | 0.622 |
AFY17321.1 | AFY20933.1 | PputUW4_00112 | PputUW4_03741 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | EAL/GGDEF domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | 0.616 |
AFY17321.1 | AFY21139.1 | PputUW4_00112 | PputUW4_03947 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | Hypothetical protein; [S] COG3672 Predicted periplasmic protein. | 0.837 |
AFY17321.1 | AFY21140.1 | PputUW4_00112 | PputUW4_03948 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | Diguanylate cyclase/phosphodiesterase; [T] COG2200 FOG: EAL domain. | 0.494 |
AFY17321.1 | AFY21143.1 | PputUW4_00112 | PputUW4_03951 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | [MU] COG1538 Outer membrane protein. | 0.715 |
AFY17321.1 | AFY21144.1 | PputUW4_00112 | PputUW4_03952 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | Type I secretion system ATPase; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. | 0.625 |
AFY17321.1 | AFY21145.1 | PputUW4_00112 | PputUW4_03953 | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | [M] COG0845 Membrane-fusion protein. | 0.621 |
AFY17322.1 | AFY17321.1 | PputUW4_00113 | PputUW4_00112 | Hypothetical protein. | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | 0.718 |
AFY17322.1 | AFY17323.1 | PputUW4_00113 | PputUW4_00115 | Hypothetical protein. | [MU] COG1538 Outer membrane protein. | 0.764 |
AFY17322.1 | AFY17324.1 | PputUW4_00113 | PputUW4_00116 | Hypothetical protein. | Type I secretion system ATPase family protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. | 0.758 |
AFY17322.1 | AFY17325.1 | PputUW4_00113 | PputUW4_00117 | Hypothetical protein. | [M] COG0845 Membrane-fusion protein. | 0.704 |
AFY17322.1 | AFY21139.1 | PputUW4_00113 | PputUW4_03947 | Hypothetical protein. | Hypothetical protein; [S] COG3672 Predicted periplasmic protein. | 0.750 |
AFY17322.1 | AFY21140.1 | PputUW4_00113 | PputUW4_03948 | Hypothetical protein. | Diguanylate cyclase/phosphodiesterase; [T] COG2200 FOG: EAL domain. | 0.738 |
AFY17322.1 | AFY21143.1 | PputUW4_00113 | PputUW4_03951 | Hypothetical protein. | [MU] COG1538 Outer membrane protein. | 0.768 |
AFY17322.1 | AFY21144.1 | PputUW4_00113 | PputUW4_03952 | Hypothetical protein. | Type I secretion system ATPase; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. | 0.749 |
AFY17322.1 | AFY21145.1 | PputUW4_00113 | PputUW4_03953 | Hypothetical protein. | [M] COG0845 Membrane-fusion protein. | 0.699 |
AFY17323.1 | AFY17321.1 | PputUW4_00115 | PputUW4_00112 | [MU] COG1538 Outer membrane protein. | GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. | 0.676 |
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