Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY19203.1 | rsmB | PputUW4_01999 | PputUW4_00014 | Methyltransferase domain protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.450 |
| AFY19203.1 | rumA | PputUW4_01999 | PputUW4_04106 | Methyltransferase domain protein; [QR] COG0500 SAM-dependent methyltransferases. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.636 |
| AFY19203.1 | trmB | PputUW4_01999 | PputUW4_05126 | Methyltransferase domain protein; [QR] COG0500 SAM-dependent methyltransferases. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.762 |
| coaE | mazG | PputUW4_04643 | PputUW4_04104 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | 0.921 |
| coaE | rumA | PputUW4_04643 | PputUW4_04106 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.511 |
| cysM | mazG | PputUW4_04107 | PputUW4_04104 | [E] COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | 0.437 |
| cysM | relA | PputUW4_04107 | PputUW4_04105 | [E] COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.589 |
| cysM | rumA | PputUW4_04107 | PputUW4_04106 | [E] COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.830 |
| gidB | relA | PputUW4_05437 | PputUW4_04105 | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.557 |
| gidB | rlmB | PputUW4_05437 | PputUW4_00462 | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 23S rRNA (guanosine-2'-O-)-methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.659 |
| gidB | rsmB | PputUW4_05437 | PputUW4_00014 | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.429 |
| gidB | rumA | PputUW4_05437 | PputUW4_04106 | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.500 |
| gidB | trmB | PputUW4_05437 | PputUW4_05126 | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.439 |
| lysS | rumA | PputUW4_01048 | PputUW4_04106 | [J] COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.551 |
| mazG | coaE | PputUW4_04104 | PputUW4_04643 | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.921 |
| mazG | cysM | PputUW4_04104 | PputUW4_04107 | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | [E] COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.437 |
| mazG | relA | PputUW4_04104 | PputUW4_04105 | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.971 |
| mazG | rumA | PputUW4_04104 | PputUW4_04106 | Nucleoside triphosphate pyrophosphohydrolase; [R] COG1694 Predicted pyrophosphatase. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.528 |
| relA | cysM | PputUW4_04105 | PputUW4_04107 | GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | [E] COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.589 |
| relA | gidB | PputUW4_04105 | PputUW4_05437 | GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.557 |
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