Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17251.1 | AFY18494.1 | PputUW4_00042 | PputUW4_01288 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | NlpB/DapX lipoprotein. | 0.596 |
AFY17251.1 | AFY20686.1 | PputUW4_00042 | PputUW4_03493 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). | 0.742 |
AFY17251.1 | AFY21253.1 | PputUW4_00042 | PputUW4_04061 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | Hypothetical protein. | 0.657 |
AFY17251.1 | AFY21279.1 | PputUW4_00042 | PputUW4_04087 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | Hypothetical protein. | 0.635 |
AFY17251.1 | AFY21311.1 | PputUW4_00042 | PputUW4_04119 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | [S] COG3308 Predicted membrane protein. | 0.742 |
AFY17251.1 | mucA | PputUW4_00042 | PputUW4_01279 | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | Sigma factor algU negative regulatory protein MucA; [T] COG3073 Negative regulator of sigma E activity. | 0.767 |
AFY17616.1 | AFY18494.1 | PputUW4_00408 | PputUW4_01288 | LmbE-like protein. | NlpB/DapX lipoprotein. | 0.688 |
AFY17616.1 | AFY20934.1 | PputUW4_00408 | PputUW4_03742 | LmbE-like protein. | Hypothetical protein. | 0.470 |
AFY17616.1 | AFY21253.1 | PputUW4_00408 | PputUW4_04061 | LmbE-like protein. | Hypothetical protein. | 0.735 |
AFY17616.1 | AFY21279.1 | PputUW4_00408 | PputUW4_04087 | LmbE-like protein. | Hypothetical protein. | 0.703 |
AFY17616.1 | AFY21311.1 | PputUW4_00408 | PputUW4_04119 | LmbE-like protein. | [S] COG3308 Predicted membrane protein. | 0.679 |
AFY17616.1 | mucA | PputUW4_00408 | PputUW4_01279 | LmbE-like protein. | Sigma factor algU negative regulatory protein MucA; [T] COG3073 Negative regulator of sigma E activity. | 0.680 |
AFY18494.1 | AFY17251.1 | PputUW4_01288 | PputUW4_00042 | NlpB/DapX lipoprotein. | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | 0.596 |
AFY18494.1 | AFY17616.1 | PputUW4_01288 | PputUW4_00408 | NlpB/DapX lipoprotein. | LmbE-like protein. | 0.688 |
AFY18494.1 | AFY20686.1 | PputUW4_01288 | PputUW4_03493 | NlpB/DapX lipoprotein. | [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). | 0.625 |
AFY18494.1 | AFY21253.1 | PputUW4_01288 | PputUW4_04061 | NlpB/DapX lipoprotein. | Hypothetical protein. | 0.744 |
AFY18494.1 | AFY21279.1 | PputUW4_01288 | PputUW4_04087 | NlpB/DapX lipoprotein. | Hypothetical protein. | 0.768 |
AFY18494.1 | AFY21311.1 | PputUW4_01288 | PputUW4_04119 | NlpB/DapX lipoprotein. | [S] COG3308 Predicted membrane protein. | 0.723 |
AFY18494.1 | mucA | PputUW4_01288 | PputUW4_01279 | NlpB/DapX lipoprotein. | Sigma factor algU negative regulatory protein MucA; [T] COG3073 Negative regulator of sigma E activity. | 0.722 |
AFY20686.1 | AFY17251.1 | PputUW4_03493 | PputUW4_00042 | [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). | Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain. | 0.742 |
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