STRINGSTRING
AFY21314.1 AFY21314.1 AFY22459.1 AFY22459.1 ctaC ctaC AFY17633.1 AFY17633.1 AFY19914.1 AFY19914.1 AFY18933.1 AFY18933.1 AFY20063.1 AFY20063.1 AFY19226.1 AFY19226.1 AFY22134.1 AFY22134.1 AFY17251.1 AFY17251.1 sprT sprT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY21314.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
AFY22459.1
anti-RNA polymerase sigma 70 factor; [K] COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family.
  
     0.747
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.729
AFY17633.1
[S] COG3151 Uncharacterized protein conserved in bacteria.
  
     0.629
AFY19914.1
Hypothetical protein.
  
    0.603
AFY18933.1
Hypothetical protein.
  
    0.597
AFY20063.1
[S] COG3139 Uncharacterized protein conserved in bacteria.
  
     0.595
AFY19226.1
Hypothetical protein.
  
    0.585
AFY22134.1
SpoVR family protein; [S] COG2719 Uncharacterized conserved protein.
   
  
 0.575
AFY17251.1
Hypothetical protein; [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.
  
     0.553
sprT
SprT family peptidase; [S] COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.
       0.549
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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