node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY21487.1 | ruvA | PputUW4_04295 | PputUW4_04297 | [R] COG0824 Predicted thioesterase. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.645 |
AFY21487.1 | ruvB | PputUW4_04295 | PputUW4_04296 | [R] COG0824 Predicted thioesterase. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.643 |
AFY21487.1 | ruvC | PputUW4_04295 | PputUW4_04298 | [R] COG0824 Predicted thioesterase. | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.554 |
AFY21491.1 | ruvA | PputUW4_04299 | PputUW4_04297 | Hypothetical protein; [S] COG0217 Uncharacterized conserved protein. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.602 |
AFY21491.1 | ruvB | PputUW4_04299 | PputUW4_04296 | Hypothetical protein; [S] COG0217 Uncharacterized conserved protein. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.578 |
AFY21491.1 | ruvC | PputUW4_04299 | PputUW4_04298 | Hypothetical protein; [S] COG0217 Uncharacterized conserved protein. | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.653 |
AFY22488.1 | def1 | PputUW4_05299 | PputUW4_00016 | Magnesium chelatase; [O] COG0606 Predicted ATPase with chaperone activity. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.432 |
AFY22488.1 | ruvC | PputUW4_05299 | PputUW4_04298 | Magnesium chelatase; [O] COG0606 Predicted ATPase with chaperone activity. | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.724 |
def1 | AFY22488.1 | PputUW4_00016 | PputUW4_05299 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Magnesium chelatase; [O] COG0606 Predicted ATPase with chaperone activity. | 0.432 |
def1 | polA | PputUW4_00016 | PputUW4_00070 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.430 |
def1 | ruvC | PputUW4_00016 | PputUW4_04298 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.540 |
ftsK | polA | PputUW4_01830 | PputUW4_00070 | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.640 |
ftsK | recJ | PputUW4_01830 | PputUW4_04420 | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | [L] COG0608 Single-stranded DNA-specific exonuclease. | 0.471 |
ftsK | ruvA | PputUW4_01830 | PputUW4_04297 | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.590 |
ftsK | ruvB | PputUW4_01830 | PputUW4_04296 | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.637 |
ftsK | ruvC | PputUW4_01830 | PputUW4_04298 | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.557 |
polA | def1 | PputUW4_00070 | PputUW4_00016 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.430 |
polA | ftsK | PputUW4_00070 | PputUW4_01830 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. | 0.640 |
polA | recJ | PputUW4_00070 | PputUW4_04420 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | [L] COG0608 Single-stranded DNA-specific exonuclease. | 0.637 |
polA | recX | PputUW4_00070 | PputUW4_01126 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.539 |