node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17868.1 | cspC | PputUW4_00661 | PputUW4_04303 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 0.534 |
AFY17868.1 | rplO | PputUW4_00661 | PputUW4_04865 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.619 |
AFY17868.1 | rpoA | PputUW4_00661 | PputUW4_04859 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
AFY17868.1 | rpoB | PputUW4_00661 | PputUW4_04891 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
AFY17868.1 | rpoZ | PputUW4_00661 | PputUW4_05335 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.958 |
AFY17868.1 | rpsE | PputUW4_00661 | PputUW4_04867 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.696 |
AFY17868.1 | rpsL | PputUW4_00661 | PputUW4_04889 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.498 |
AFY17868.1 | rpsQ | PputUW4_00661 | PputUW4_04875 | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.473 |
cspC | AFY17868.1 | PputUW4_04303 | PputUW4_00661 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.534 |
cspC | rplO | PputUW4_04303 | PputUW4_04865 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.438 |
cspC | rpmE | PputUW4_04303 | PputUW4_00340 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.495 |
cspC | rpmJ | PputUW4_04303 | PputUW4_04863 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | [J] COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.471 |
cspC | rpoA | PputUW4_04303 | PputUW4_04859 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.465 |
cspC | rpoB | PputUW4_04303 | PputUW4_04891 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.468 |
cspC | rpoZ | PputUW4_04303 | PputUW4_05335 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.477 |
cspC | rpsE | PputUW4_04303 | PputUW4_04867 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.425 |
cspC | rpsL | PputUW4_04303 | PputUW4_04889 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.509 |
cspC | rpsQ | PputUW4_04303 | PputUW4_04875 | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.438 |
rplO | AFY17868.1 | PputUW4_04865 | PputUW4_00661 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.619 |
rplO | cspC | PputUW4_04865 | PputUW4_04303 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Cold-shock DNA-binding protein; [K] COG1278 Cold shock proteins. | 0.438 |