lysE protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lysE

Amino acid transporter LysE; [R] COG1279 Lysine efflux permease. (200 aa)

Predicted Functional Partners:

iciA

0.923

AFY21561.1

0.920

sodB

0.545

AFY21559.1

0.523

AFY21558.1

0.404

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY21558.1	AFY21559.1	PputUW4_04366	PputUW4_04367	Hypothetical protein.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.582
AFY21558.1	iciA	PputUW4_04366	PputUW4_04368	Hypothetical protein.	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	0.491
AFY21558.1	lysE	PputUW4_04366	PputUW4_04370	Hypothetical protein.	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	0.404
AFY21559.1	AFY21558.1	PputUW4_04367	PputUW4_04366	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Hypothetical protein.	0.582
AFY21559.1	AFY21561.1	PputUW4_04367	PputUW4_04369	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	[S] COG3602 Uncharacterized protein conserved in bacteria.	0.521
AFY21559.1	iciA	PputUW4_04367	PputUW4_04368	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	0.666
AFY21559.1	lysE	PputUW4_04367	PputUW4_04370	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	0.523
AFY21559.1	sodB	PputUW4_04367	PputUW4_04371	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.659
AFY21561.1	AFY21559.1	PputUW4_04369	PputUW4_04367	[S] COG3602 Uncharacterized protein conserved in bacteria.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.521
AFY21561.1	iciA	PputUW4_04369	PputUW4_04368	[S] COG3602 Uncharacterized protein conserved in bacteria.	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	0.614
AFY21561.1	lysE	PputUW4_04369	PputUW4_04370	[S] COG3602 Uncharacterized protein conserved in bacteria.	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	0.920
AFY21561.1	sodB	PputUW4_04369	PputUW4_04371	[S] COG3602 Uncharacterized protein conserved in bacteria.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.545
iciA	AFY21558.1	PputUW4_04368	PputUW4_04366	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein.	0.491
iciA	AFY21559.1	PputUW4_04368	PputUW4_04367	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.666
iciA	AFY21561.1	PputUW4_04368	PputUW4_04369	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	[S] COG3602 Uncharacterized protein conserved in bacteria.	0.614
iciA	lysE	PputUW4_04368	PputUW4_04370	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	0.923
iciA	sodB	PputUW4_04368	PputUW4_04371	Chromosome replication initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.458
lysE	AFY21558.1	PputUW4_04370	PputUW4_04366	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	Hypothetical protein.	0.404
lysE	AFY21559.1	PputUW4_04370	PputUW4_04367	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.523
lysE	AFY21561.1	PputUW4_04370	PputUW4_04369	Amino acid transporter LysE; [R] COG1279 Lysine efflux permease.	[S] COG3602 Uncharacterized protein conserved in bacteria.	0.920