Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY21627.1 | AFY21629.1 | PputUW4_04435 | PputUW4_04437 | Cytochrome c assembly protein; [R] COG4137 ABC-type uncharacterized transport system, permease component. | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | 0.514 |
AFY21627.1 | corB | PputUW4_04435 | PputUW4_04436 | Cytochrome c assembly protein; [R] COG4137 ABC-type uncharacterized transport system, permease component. | CBS (cystathionine beta-synthase) domain-containing protein; [P] COG4536 Putative Mg2+ and Co2+ transporter CorB. | 0.793 |
AFY21629.1 | AFY21627.1 | PputUW4_04437 | PputUW4_04435 | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | Cytochrome c assembly protein; [R] COG4137 ABC-type uncharacterized transport system, permease component. | 0.514 |
AFY21629.1 | corB | PputUW4_04437 | PputUW4_04436 | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | CBS (cystathionine beta-synthase) domain-containing protein; [P] COG4536 Putative Mg2+ and Co2+ transporter CorB. | 0.505 |
AFY21629.1 | valS | PputUW4_04437 | PputUW4_04438 | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.438 |
corB | AFY21627.1 | PputUW4_04436 | PputUW4_04435 | CBS (cystathionine beta-synthase) domain-containing protein; [P] COG4536 Putative Mg2+ and Co2+ transporter CorB. | Cytochrome c assembly protein; [R] COG4137 ABC-type uncharacterized transport system, permease component. | 0.793 |
corB | AFY21629.1 | PputUW4_04436 | PputUW4_04437 | CBS (cystathionine beta-synthase) domain-containing protein; [P] COG4536 Putative Mg2+ and Co2+ transporter CorB. | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | 0.505 |
valS | AFY21629.1 | PputUW4_04438 | PputUW4_04437 | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | General substrate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily. | 0.438 |