STRINGSTRING
algE algE algK algK alg44 alg44 algG algG algX algX algL algL alg8 alg8 algI algI algJ algJ algF algF algA algA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
algEOuter membrane protein AlgE. (494 aa)    
Predicted Functional Partners:
algK
Alginate biosynthesis protein AlgK; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
  
 0.939
alg44
Alginate biosynthesis protein Alg44.
  
  
 0.925
algG
Alginate biosynthesis protein AlgG.
  
  
 0.912
algX
Alginate biosynthesis protein AlgX.
  
  
 0.908
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
  
 0.907
alg8
Alginate biosynthesis protein Alg8; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
  
 0.891
algI
Alginate biosynthesis protein AlgI; [M] COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.
  
  
 0.823
algJ
Alginate biosynthesis protein AlgJ.
  
  
 0.810
algF
Alginate biosynthesis protein AlgF.
  
  
 0.770
algA
Bifunctional protein mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.721
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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