STRINGSTRING
ndh2 ndh2 AFY21841.1 AFY21841.1 AFY21839.1 AFY21839.1 AFY21840.1 AFY21840.1 coxB coxB phaAB phaAB pvdD pvdD AFY21837.1 AFY21837.1 slyD slyD cobA1 cobA1 AFY21838.1 AFY21838.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ndh2[C] COG1252 NADH dehydrogenase, FAD-containing subunit. (432 aa)    
Predicted Functional Partners:
AFY21841.1
Hypothetical protein.
       0.651
AFY21839.1
Hypothetical protein.
       0.550
AFY21840.1
MOSC domain-containing protein; [S] COG2258 Uncharacterized protein conserved in bacteria.
       0.550
coxB
[C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
     
 0.510
phaAB
K(+)/H(+) antiporter subunit A/B; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
  
  
 0.492
pvdD
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.467
AFY21837.1
[S] COG3235 Predicted membrane protein.
       0.443
slyD
[O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.
  
    0.442
cobA1
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
     
 0.436
AFY21838.1
Hypothetical protein.
       0.433
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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