Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY21870.1 | ispB | PputUW4_04679 | PputUW4_04677 | Hypothetical protein. | [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.477 |
AFY21870.1 | phnA | PputUW4_04679 | PputUW4_04678 | Hypothetical protein. | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | 0.443 |
ispB | AFY21870.1 | PputUW4_04677 | PputUW4_04679 | [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Hypothetical protein. | 0.477 |
ispB | phnA | PputUW4_04677 | PputUW4_04678 | [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | 0.512 |
phnA | AFY21870.1 | PputUW4_04678 | PputUW4_04679 | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | Hypothetical protein. | 0.443 |
phnA | ispB | PputUW4_04678 | PputUW4_04677 | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.512 |
phnA | putA | PputUW4_04678 | PputUW4_00387 | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.431 |
putA | phnA | PputUW4_00387 | PputUW4_04678 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | 0.431 |