AFY21918.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY21918.1

Hypothetical protein. (319 aa)

Predicted Functional Partners:

AFY21917.1

0.807

AFY21916.1

0.555

AFY20728.1

0.497

AFY18518.1

0.492

AFY17697.1

0.466

prtR

0.456

AFY18208.1

0.446

AFY18737.1

0.444

AFY17826.1

0.438

AFY19184.1

0.437

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17697.1	AFY20728.1	PputUW4_00489	PputUW4_03535	[G] COG2942 N-acyl-D-glucosamine 2-epimerase.	Abortive infection protein; [R] COG1266 Predicted metal-dependent membrane protease.	0.449
AFY17697.1	AFY21918.1	PputUW4_00489	PputUW4_04728	[G] COG2942 N-acyl-D-glucosamine 2-epimerase.	Hypothetical protein.	0.466
AFY17826.1	AFY21918.1	PputUW4_00618	PputUW4_04728	D-aminoacylase; [Q] COG3653 N-acyl-D-aspartate/D-glutamate deacylase.	Hypothetical protein.	0.438
AFY18208.1	AFY18518.1	PputUW4_01001	PputUW4_01312	Hypothetical protein.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.751
AFY18208.1	AFY18737.1	PputUW4_01001	PputUW4_01532	Hypothetical protein.	Hypothetical protein; [M] COG0438 Glycosyltransferase.	0.762
AFY18208.1	AFY19184.1	PputUW4_01001	PputUW4_01980	Hypothetical protein.	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.696
AFY18208.1	AFY21918.1	PputUW4_01001	PputUW4_04728	Hypothetical protein.	Hypothetical protein.	0.446
AFY18518.1	AFY18208.1	PputUW4_01312	PputUW4_01001	[GEPR] COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein.	0.751
AFY18518.1	AFY18737.1	PputUW4_01312	PputUW4_01532	[GEPR] COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein; [M] COG0438 Glycosyltransferase.	0.766
AFY18518.1	AFY19184.1	PputUW4_01312	PputUW4_01980	[GEPR] COG0477 Permeases of the major facilitator superfamily.	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.629
AFY18518.1	AFY20728.1	PputUW4_01312	PputUW4_03535	[GEPR] COG0477 Permeases of the major facilitator superfamily.	Abortive infection protein; [R] COG1266 Predicted metal-dependent membrane protease.	0.424
AFY18518.1	AFY21918.1	PputUW4_01312	PputUW4_04728	[GEPR] COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein.	0.492
AFY18737.1	AFY18208.1	PputUW4_01532	PputUW4_01001	Hypothetical protein; [M] COG0438 Glycosyltransferase.	Hypothetical protein.	0.762
AFY18737.1	AFY18518.1	PputUW4_01532	PputUW4_01312	Hypothetical protein; [M] COG0438 Glycosyltransferase.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.766
AFY18737.1	AFY19184.1	PputUW4_01532	PputUW4_01980	Hypothetical protein; [M] COG0438 Glycosyltransferase.	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.827
AFY18737.1	AFY21918.1	PputUW4_01532	PputUW4_04728	Hypothetical protein; [M] COG0438 Glycosyltransferase.	Hypothetical protein.	0.444
AFY19184.1	AFY18208.1	PputUW4_01980	PputUW4_01001	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	Hypothetical protein.	0.696
AFY19184.1	AFY18518.1	PputUW4_01980	PputUW4_01312	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.629
AFY19184.1	AFY18737.1	PputUW4_01980	PputUW4_01532	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	Hypothetical protein; [M] COG0438 Glycosyltransferase.	0.827
AFY19184.1	AFY21918.1	PputUW4_01980	PputUW4_04728	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	Hypothetical protein.	0.437