STRINGSTRING
AFY21964.1 AFY21964.1 AFY21963.1 AFY21963.1 rlpA2 rlpA2 cinQ cinQ holA holA AFY22556.1 AFY22556.1 sleB sleB lptE lptE amiC amiC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
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Textmining
[Homology]
Score
AFY21964.1[M] COG2951 Membrane-bound lytic murein transglycosylase B. (440 aa)    
Predicted Functional Partners:
AFY21963.1
[S] COG3036 Uncharacterized protein conserved in bacteria.
       0.649
rlpA2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.498
cinQ
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.458
holA
[L] COG1466 DNA polymerase III, delta subunit.
       0.449
AFY22556.1
Aldose 1-epimerase; [G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.436
sleB
[M] COG3773 Cell wall hydrolyses involved in spore germination.
  
   
 0.418
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
       0.411
amiC
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
     
 0.405
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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