Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17466.1 | fic | PputUW4_00258 | PputUW4_04815 | Hypothetical protein. | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 0.434 |
AFY22004.1 | fic | PputUW4_04814 | PputUW4_04815 | [S] COG4676 Uncharacterized protein conserved in bacteria. | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 0.437 |
dxs | fic | PputUW4_04818 | PputUW4_04815 | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 0.401 |
dxs | ispA | PputUW4_04818 | PputUW4_04817 | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.848 |
dxs | xseB | PputUW4_04818 | PputUW4_04816 | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.681 |
fic | AFY17466.1 | PputUW4_04815 | PputUW4_00258 | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | Hypothetical protein. | 0.434 |
fic | AFY22004.1 | PputUW4_04815 | PputUW4_04814 | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | [S] COG4676 Uncharacterized protein conserved in bacteria. | 0.437 |
fic | dxs | PputUW4_04815 | PputUW4_04818 | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.401 |
fic | ispA | PputUW4_04815 | PputUW4_04817 | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.550 |
fic | xseB | PputUW4_04815 | PputUW4_04816 | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.550 |
ispA | dxs | PputUW4_04817 | PputUW4_04818 | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.848 |
ispA | fic | PputUW4_04817 | PputUW4_04815 | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 0.550 |
ispA | xseB | PputUW4_04817 | PputUW4_04816 | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.913 |
xseB | dxs | PputUW4_04816 | PputUW4_04818 | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.681 |
xseB | fic | PputUW4_04816 | PputUW4_04815 | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Filamentation induced by cAMP protein Fic; [S] COG3177 Uncharacterized conserved protein. | 0.550 |
xseB | ispA | PputUW4_04816 | PputUW4_04817 | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Geranyltranstransferase; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.913 |