STRINGSTRING
ompW ompW hemN1 hemN1 ccoO1 ccoO1 ccoO2 ccoO2 AFY18546.1 AFY18546.1 AFY20286.1 AFY20286.1 ccoN1 ccoN1 ccoN2 ccoN2 ccoG ccoG AFY20000.1 AFY20000.1 AFY22027.1 AFY22027.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompW[M] COG3047 Outer membrane protein W. (232 aa)    
Predicted Functional Partners:
hemN1
[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.803
ccoO1
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
    0.675
ccoO2
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
    0.675
AFY18546.1
polyphosphate:AMP phosphotransferase; [S] COG2326 Uncharacterized conserved protein.
   
    0.596
AFY20286.1
Hypothetical protein; [S] COG2326 Uncharacterized conserved protein.
   
    0.596
ccoN1
[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.581
ccoN2
[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.581
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
 
    0.569
AFY20000.1
Iron-sulfur cluster-binding protein; [C] COG0348 Polyferredoxin.
 
    0.564
AFY22027.1
ABC transporter-like protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
     
 0.547
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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