creD protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

creD

[V] COG4452 Inner membrane protein involved in colicin E2 resistance. (456 aa)

Predicted Functional Partners:

creC

0.928

creB

0.766

AFY17498.1

0.724

AFY21521.1

0.552

AFY17499.1

0.549

AFY21520.1

0.543

AFY21525.1

0.540

AFY20537.1

0.538

AFY22193.1

0.508

AFY21519.1

0.483

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17498.1	AFY17499.1	PputUW4_00290	PputUW4_00291	Hypothetical protein.	Hypothetical protein.	0.971
AFY17498.1	AFY21519.1	PputUW4_00290	PputUW4_04327	Hypothetical protein.	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	0.435
AFY17498.1	AFY21520.1	PputUW4_00290	PputUW4_04328	Hypothetical protein.	[S] COG1300 Uncharacterized membrane protein.	0.430
AFY17498.1	AFY21521.1	PputUW4_00290	PputUW4_04329	Hypothetical protein.	Hypothetical protein.	0.627
AFY17498.1	AFY21525.1	PputUW4_00290	PputUW4_04333	Hypothetical protein.	Hypothetical protein; [R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).	0.430
AFY17498.1	creC	PputUW4_00290	PputUW4_05001	Hypothetical protein.	[T] COG0642 Signal transduction histidine kinase.	0.685
AFY17498.1	creD	PputUW4_00290	PputUW4_05000	Hypothetical protein.	[V] COG4452 Inner membrane protein involved in colicin E2 resistance.	0.724
AFY17499.1	AFY17498.1	PputUW4_00291	PputUW4_00290	Hypothetical protein.	Hypothetical protein.	0.971
AFY17499.1	AFY21521.1	PputUW4_00291	PputUW4_04329	Hypothetical protein.	Hypothetical protein.	0.578
AFY17499.1	creC	PputUW4_00291	PputUW4_05001	Hypothetical protein.	[T] COG0642 Signal transduction histidine kinase.	0.584
AFY17499.1	creD	PputUW4_00291	PputUW4_05000	Hypothetical protein.	[V] COG4452 Inner membrane protein involved in colicin E2 resistance.	0.549
AFY20537.1	creD	PputUW4_03342	PputUW4_05000	Hypothetical protein; [S] COG3777 Uncharacterized conserved protein.	[V] COG4452 Inner membrane protein involved in colicin E2 resistance.	0.538
AFY21519.1	AFY17498.1	PputUW4_04327	PputUW4_00290	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	Hypothetical protein.	0.435
AFY21519.1	AFY21520.1	PputUW4_04327	PputUW4_04328	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	[S] COG1300 Uncharacterized membrane protein.	0.989
AFY21519.1	AFY21521.1	PputUW4_04327	PputUW4_04329	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	Hypothetical protein.	0.962
AFY21519.1	AFY21525.1	PputUW4_04327	PputUW4_04333	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	Hypothetical protein; [R] COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).	0.867
AFY21519.1	creC	PputUW4_04327	PputUW4_05001	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	[T] COG0642 Signal transduction histidine kinase.	0.402
AFY21519.1	creD	PputUW4_04327	PputUW4_05000	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	[V] COG4452 Inner membrane protein involved in colicin E2 resistance.	0.483
AFY21520.1	AFY17498.1	PputUW4_04328	PputUW4_00290	[S] COG1300 Uncharacterized membrane protein.	Hypothetical protein.	0.430
AFY21520.1	AFY21519.1	PputUW4_04328	PputUW4_04327	[S] COG1300 Uncharacterized membrane protein.	RDD domain-containing protein; [S] COG1714 Predicted membrane protein/domain.	0.989