STRINGSTRING
AFY22260.1 AFY22260.1 AFY17302.1 AFY17302.1 AFY17346.1 AFY17346.1 AFY18278.1 AFY18278.1 psiF psiF ligb ligb AFY21831.1 AFY21831.1 AFY17433.1 AFY17433.1 AFY19992.1 AFY19992.1 fimD fimD AFY17297.1 AFY17297.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY22260.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
AFY17302.1
Hypothetical protein.
 
    0.963
AFY17346.1
Hypothetical protein.
  
    0.787
AFY18278.1
Lipoprotein; [S] COG3126 Uncharacterized protein conserved in bacteria.
  
    0.707
psiF
Phosphate starvation-inducible protein PsiF.
  
    0.680
ligb
NAD-dependent DNA ligase LigB; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
 
     0.670
AFY21831.1
Transport-associated protein; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.647
AFY17433.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
    0.619
AFY19992.1
Outer membrane autotransporter; [M] COG3468 Type V secretory pathway, adhesin AidA.
  
     0.616
fimD
Fimbrial biogenesis outer membrane usher protein; [NU] COG3188 P pilus assembly protein, porin PapC.
  
     0.594
AFY17297.1
Hypothetical protein.
  
     0.580
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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