STRINGSTRING
AFY22261.1 AFY22261.1 AFY19604.1 AFY19604.1 AFY22379.1 AFY22379.1 AFY18981.1 AFY18981.1 AFY21837.1 AFY21837.1 oprD5 oprD5 AFY17609.1 AFY17609.1 mltA mltA lptE lptE AFY21943.1 AFY21943.1 ctaC ctaC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY22261.1Cytochrome c, class II; [C] COG3909 Cytochrome c556. (149 aa)    
Predicted Functional Partners:
AFY19604.1
Hypothetical protein.
  
     0.681
AFY22379.1
Hypothetical protein.
  
    0.637
AFY18981.1
[S] COG2911 Uncharacterized protein conserved in bacteria.
 
     0.580
AFY21837.1
[S] COG3235 Predicted membrane protein.
  
     0.554
oprD5
Outer membrane porin.
  
     0.549
AFY17609.1
Lipopolysaccharide core biosynthesis protein; [RTKL] COG0515 Serine/threonine protein kinase.
  
     0.542
mltA
Membrane-bound lytic murein transglycosylase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.533
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.531
AFY21943.1
Hypothetical protein.
  
     0.504
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.492
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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