STRINGSTRING
madL madL madM madM mdcC mdcC mdcB mdcB mdcG mdcG mdcA mdcA mdcE mdcE mdcD mdcD mdcH mdcH AFY22280.1 AFY22280.1 chpC chpC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
madLMalonate transporter MadL subunit. (138 aa)    
Predicted Functional Partners:
madM
Malonate transporter, MadM subunit.
 
   
 0.955
mdcC
Malonate decarboxylase subunit delta; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
    0.942
mdcB
triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
    0.929
mdcG
phosphoribosyl-dephospho-CoA transferase; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family.
 
    0.913
mdcA
Malonate decarboxylase, alpha subunit.
 
  
 0.905
mdcE
Malonate decarboxylase, gamma subunit.
 
    0.899
mdcD
[I] COG0777 Acetyl-CoA carboxylase beta subunit.
 
    0.892
mdcH
Acyl-carrier-protein S-malonyltransferase; [Q] COG3321 Polyketide synthase modules and related proteins.
 
  
 0.799
AFY22280.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
chpC
Chemosensory protein ChpC.
 
     0.457
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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