Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY19323.1 | AFY19888.1 | PputUW4_02121 | PputUW4_02693 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Heme oxygenase. | 0.463 |
AFY19323.1 | AFY21505.1 | PputUW4_02121 | PputUW4_04313 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | 0.610 |
AFY19323.1 | AFY21948.1 | PputUW4_02121 | PputUW4_04758 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase; [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.649 |
AFY19323.1 | moeB | PputUW4_02121 | PputUW4_04575 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Molybdopterin biosynthesis protein MoeB; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.924 |
AFY19323.1 | thiC | PputUW4_02121 | PputUW4_00421 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.748 |
AFY19323.1 | thiE | PputUW4_02121 | PputUW4_04759 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.606 |
AFY19323.1 | thiG | PputUW4_02121 | PputUW4_05127 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.831 |
AFY19323.1 | thiS | PputUW4_02121 | PputUW4_05128 | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | [H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | 0.855 |
AFY19888.1 | AFY19323.1 | PputUW4_02693 | PputUW4_02121 | Heme oxygenase. | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.463 |
AFY19888.1 | AFY21505.1 | PputUW4_02693 | PputUW4_04313 | Heme oxygenase. | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | 0.522 |
AFY19888.1 | AFY21948.1 | PputUW4_02693 | PputUW4_04758 | Heme oxygenase. | Bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase; [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.844 |
AFY19888.1 | moeB | PputUW4_02693 | PputUW4_04575 | Heme oxygenase. | Molybdopterin biosynthesis protein MoeB; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.463 |
AFY19888.1 | thiC | PputUW4_02693 | PputUW4_00421 | Heme oxygenase. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.556 |
AFY19888.1 | thiE | PputUW4_02693 | PputUW4_04759 | Heme oxygenase. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.499 |
AFY19888.1 | thiG | PputUW4_02693 | PputUW4_05127 | Heme oxygenase. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.685 |
AFY19888.1 | thiS | PputUW4_02693 | PputUW4_05128 | Heme oxygenase. | [H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | 0.657 |
AFY21505.1 | AFY19323.1 | PputUW4_04313 | PputUW4_02121 | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | ThiF family protein; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.610 |
AFY21505.1 | AFY19888.1 | PputUW4_04313 | PputUW4_02693 | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | Heme oxygenase. | 0.522 |
AFY21505.1 | AFY21948.1 | PputUW4_04313 | PputUW4_04758 | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | Bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase; [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.835 |
AFY21505.1 | moeB | PputUW4_04313 | PputUW4_04575 | Hypothetical protein; [H] COG0352 Thiamine monophosphate synthase. | Molybdopterin biosynthesis protein MoeB; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.610 |
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