STRINGSTRING
AFY22368.1 AFY22368.1 AFY21573.1 AFY21573.1 AFY17610.1 AFY17610.1 AFY17611.1 AFY17611.1 AFY17619.1 AFY17619.1 rfaP rfaP AFY18535.1 AFY18535.1 AFY21574.1 AFY21574.1 AFY17609.1 AFY17609.1 rfaG rfaG AFY18504.1 AFY18504.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY22368.1SdiA-regulated domain protein; [S] COG3204 Uncharacterized protein conserved in bacteria. (305 aa)    
Predicted Functional Partners:
AFY21573.1
Lipopolysaccharide kinase.
 
   
 0.776
AFY17610.1
[RTKL] COG0515 Serine/threonine protein kinase.
 
   
 0.766
AFY17611.1
[RTKL] COG0515 Serine/threonine protein kinase.
 
   
 0.758
AFY17619.1
O-Antigen Polymerase family protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
   
 0.758
rfaP
Lipopolysaccharide kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.755
AFY18535.1
Sulfatase; [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.748
AFY21574.1
Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases.
  
   
 0.741
AFY17609.1
Lipopolysaccharide core biosynthesis protein; [RTKL] COG0515 Serine/threonine protein kinase.
  
     0.732
rfaG
Lipopolysaccharide core biosynthesis protein; [M] COG0438 Glycosyltransferase.
  
     0.708
AFY18504.1
Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases.
  
   
 0.697
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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