STRINGSTRING
alr alr murF murF ddlA ddlA ddl ddl dadA1 dadA1 AFY18647.1 AFY18647.1 AFY19336.1 AFY19336.1 AFY19658.1 AFY19658.1 AFY20214.1 AFY20214.1 AFY22498.1 AFY22498.1 murD murD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (357 aa)    
Predicted Functional Partners:
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.970
ddlA
D-alanyl-alanine synthetase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.952
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.948
dadA1
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.
  
  
 0.837
AFY18647.1
Aminotransferase; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
 0.835
AFY19336.1
Nitrilase; [R] COG0388 Predicted amidohydrolase.
    
  0.804
AFY19658.1
Nitrilase; [R] COG0388 Predicted amidohydrolase.
    
  0.804
AFY20214.1
Nitrilase; [R] COG0388 Predicted amidohydrolase.
    
  0.804
AFY22498.1
Endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
  
    0.726
murD
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
 
 
 0.712
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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