STRINGSTRING
dadA2 dadA2 puuC2 puuC2 AFY19960.1 AFY19960.1 glnA5 glnA5 AFY18502.1 AFY18502.1 puuA puuA glnA6 glnA6 soxA soxA glnA4 glnA4 glnA3 glnA3 AFY20301.1 AFY20301.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA2[E] COG0665 Glycine/D-amino acid oxidases (deaminating). (435 aa)    
Predicted Functional Partners:
puuC2
[C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
 
  0.922
AFY19960.1
[E] COG0174 Glutamine synthetase.
 
  
 0.788
glnA5
[E] COG0174 Glutamine synthetase.
 
  
 0.788
AFY18502.1
[E] COG0174 Glutamine synthetase.
 
  
 0.760
puuA
[E] COG0174 Glutamine synthetase.
 
  
 0.754
glnA6
[E] COG0174 Glutamine synthetase.
 
  
 0.753
soxA
Sarcosine oxidase, alpha subunit; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
 
 0.728
glnA4
[E] COG0174 Glutamine synthetase.
 
  
 0.726
glnA3
[E] COG0174 Glutamine synthetase.
 
  
 0.718
AFY20301.1
[R] COG2071 Predicted glutamine amidotransferases.
 
  
 0.702
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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