STRINGSTRING
oxyR oxyR recG recG AFY22534.1 AFY22534.1 AFY19116.1 AFY19116.1 exbB exbB exbD exbD tonB tonB AFY19403.1 AFY19403.1 AFY19692.1 AFY19692.1 AFY18041.1 AFY18041.1 AFY21909.1 AFY21909.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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[Homology]
Score
oxyROxidative stress regulatory protein OxyR; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.809
AFY22534.1
[T] COG1639 Predicted signal transduction protein.
 
     0.664
AFY19116.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.644
exbB
TonB system transport protein ExbB; [U] COG0811 Biopolymer transport proteins.
     
 0.629
exbD
[U] COG0848 Biopolymer transport protein.
     
 0.629
tonB
[M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
     
 0.629
AFY19403.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.605
AFY19692.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.553
AFY18041.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.512
AFY21909.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.488
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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