STRINGSTRING
AFY22534.1 AFY22534.1 AFY17758.1 AFY17758.1 ccmD ccmD AFY21064.1 AFY21064.1 AFY22431.1 AFY22431.1 AFY22121.1 AFY22121.1 AFY21073.1 AFY21073.1 oxyR oxyR recG recG cheY4 cheY4 AFY20637.1 AFY20637.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AFY22534.1[T] COG1639 Predicted signal transduction protein. (466 aa)    
Predicted Functional Partners:
AFY17758.1
Hypothetical protein.
  
     0.727
ccmD
Cytochrome c-type biogenesis protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.692
AFY21064.1
Response regulator; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
 
  
 0.691
AFY22431.1
Flagellar basal body-associated protein FliL-like protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.690
AFY22121.1
Hypothetical protein.
  
    0.672
AFY21073.1
[T] COG0642 Signal transduction histidine kinase.
 
 
   0.670
oxyR
Oxidative stress regulatory protein OxyR; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.664
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.652
cheY4
Chemotaxis protein CheY; [T] COG0784 FOG: CheY-like receiver.
  
    0.644
AFY20637.1
LysM domain-containing protein; [NU] COG3170 Tfp pilus assembly protein FimV.
  
    0.638
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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