STRINGSTRING
AFY22586.1 AFY22586.1 AFY17758.1 AFY17758.1 lptC lptC AFY21729.1 AFY21729.1 AFY21279.1 AFY21279.1 AFY20637.1 AFY20637.1 pdxY pdxY AFY20978.1 AFY20978.1 AFY17262.1 AFY17262.1 AFY21253.1 AFY21253.1 AFY17624.1 AFY17624.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY22586.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
AFY17758.1
Hypothetical protein.
  
     0.669
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
     0.642
AFY21729.1
[S] COG3105 Uncharacterized protein conserved in bacteria.
  
     0.624
AFY21279.1
Hypothetical protein.
  
     0.610
AFY20637.1
LysM domain-containing protein; [NU] COG3170 Tfp pilus assembly protein FimV.
  
     0.607
pdxY
Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
       0.606
AFY20978.1
Hypothetical protein.
  
     0.589
AFY17262.1
Hypothetical protein.
  
     0.570
AFY21253.1
Hypothetical protein.
  
     0.562
AFY17624.1
FAD dependent oxidoreductase family protein; [C] COG0578 Glycerol-3-phosphate dehydrogenase.
  
     0.551
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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