STRINGSTRING
ACA75069.1 ACA75069.1 ACA71354.1 ACA71354.1 ACA75070.1 ACA75070.1 ACA75068.1 ACA75068.1 ACA71355.1 ACA71355.1 ACA75067.1 ACA75067.1 ACA71352.1 ACA71352.1 ACA71350.1 ACA71350.1 cmoM cmoM ACA75065.1 ACA75065.1 ACA71349.1 ACA71349.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA75069.1PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion. (156 aa)    
Predicted Functional Partners:
ACA71354.1
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pen:PSEEN0645 Flp pilus assembly protein CpaB.
  
  
 0.640
ACA75070.1
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN0653 DNA-binding response regulator, LuxR family.
  
  
 0.586
ACA75068.1
Lipoprotein; KEGG: pen:PSEEN0658 lipoprotein.
       0.551
ACA71355.1
PFAM: Flp/Fap pilin component; KEGG: pen:PSEEN0642 hypothetical protein.
  
  
 0.529
ACA75067.1
Lipoprotein; KEGG: pen:PSEEN0659 lipoprotein.
       0.514
ACA71352.1
KEGG: pen:PSEEN0647 hypothetical protein.
  
  
 0.503
ACA71350.1
PFAM: type II secretion system protein; KEGG: pen:PSEEN0649 type II/IV secretion system membrane protein.
  
  
 0.475
cmoM
Methyltransferase type 12; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.470
ACA75065.1
KEGG: pen:PSEEN0661 hypothetical protein.
       0.467
ACA71349.1
PFAM: type II secretion system protein; KEGG: pen:PSEEN0650 type II/IV secretion system membrane protein.
  
  
 0.466
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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