STRINGSTRING
ACA75334.1 ACA75334.1 ACA75335.1 ACA75335.1 ACA75333.1 ACA75333.1 ACA75336.1 ACA75336.1 ACA75332.1 ACA75332.1 ACA75338.1 ACA75338.1 ACA75337.1 ACA75337.1 rpsC rpsC rpsK rpsK rpsE rpsE rpsS rpsS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACA75334.1PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5139 heptose kinase WapP. (244 aa)    
Predicted Functional Partners:
ACA75335.1
Lipopolysaccharide kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
 
 0.883
ACA75333.1
PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5138 heptose kinase WapQ.
  
 
 0.847
ACA75336.1
PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN5141 glucosyltransferase I.
  
 
 0.847
ACA75332.1
KEGG: pen:PSEEN5137 hypothetical protein.
  
 
 0.843
ACA75338.1
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5143 ADP-heptose; LPS heptosyltransferase II.
     
 0.822
ACA75337.1
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5142 ADP-heptose; LPS heptosyl transferase I.
     
 0.817
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.810
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
 0.791
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 0.790
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
 0.749
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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