STRINGSTRING
AEF20027.1 AEF20027.1 AEF20028.1 AEF20028.1 AEF20029.1 AEF20029.1 fmt fmt def def AEF22514.1 AEF22514.1 AEF20032.1 AEF20032.1 AEF22203.1 AEF22203.1 AEF21179.1 AEF21179.1 AEF23361.1 AEF23361.1 AEF20026.1 AEF20026.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF20027.1KEGG: pmy:Pmen_0051 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat. (106 aa)    
Predicted Functional Partners:
AEF20028.1
TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: pmy:Pmen_0052 potassium transporter peripheral membrane component.
       0.796
AEF20029.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.796
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.796
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.721
AEF22514.1
Hypothetical protein; Manually curated; KEGG: pfo:Pfl01_4007 hypothetical protein.
  
     0.550
AEF20032.1
KEGG: pmy:Pmen_0056 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
       0.482
AEF22203.1
PFAM: Glutaredoxin; KEGG: pmy:Pmen_2745 glutaredoxin.
  
     0.420
AEF21179.1
PFAM: Protein of unknown function DUF945; KEGG: pfl:PFL_0160 hypothetical protein.
  
     0.417
AEF23361.1
Peptidase M23; KEGG: pmy:Pmen_3021 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
   
 
 0.417
AEF20026.1
KEGG: pfs:PFLU3358 putative methyl-accepting chemotaxis receptor protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain.
       0.409
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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