STRINGSTRING
AEF20032.1 AEF20032.1 trpS trpS AEF20409.1 AEF20409.1 AEF20407.1 AEF20407.1 AEF20408.1 AEF20408.1 AEF20406.1 AEF20406.1 AEF20405.1 AEF20405.1 AEF21428.1 AEF21428.1 AEF21433.1 AEF21433.1 AEF20661.1 AEF20661.1 AEF22687.1 AEF22687.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF20032.1KEGG: pmy:Pmen_0056 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup. (346 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.948
AEF20409.1
TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: pau:PA14_66620 type 4 fimbrial biogenesis outer membrane protein PilQ precursor; SMART: Secretin/TonB, short N-terminal.
 
 
 
 0.935
AEF20407.1
KEGG: pap:PSPA7_5779 type 4 fimbrial biogenesis protein PilO.
 
 
   0.887
AEF20408.1
PFAM: Pilus assembly protein PilP; KEGG: pap:PSPA7_5778 type 4 fimbrial biogenesis protein PilP.
 
 
   0.887
AEF20406.1
PFAM: Fimbrial assembly; KEGG: pmy:Pmen_0543 fimbrial assembly family protein.
  
 
   0.885
AEF20405.1
KEGG: pmy:Pmen_0542 type IV pilus assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM; SMART: Cell division protein FtsA domain.
  
 
   0.882
AEF21428.1
KEGG: mno:Mnod_2459 hypothetical protein.
  
 
 0.800
AEF21433.1
KEGG: sfr:Sfri_1683 hypothetical protein.
  
 
 0.800
AEF20661.1
KEGG: ppu:PP_0512 hypothetical protein.
   
    0.792
AEF22687.1
PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_1635 type IV pilus assembly PilZ.
  
    0.776
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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