STRINGSTRING
AEF20120.1 AEF20120.1 AEF24201.1 AEF24201.1 AEF21087.1 AEF21087.1 AEF21086.1 AEF21086.1 AEF24200.1 AEF24200.1 AEF24203.1 AEF24203.1 AEF20121.1 AEF20121.1 betI betI AEF21088.1 AEF21088.1 AEF24186.1 AEF24186.1 AEF20123.1 AEF20123.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AEF20120.1Choline ABC transporter, periplasmic binding protein; KEGG: pmy:Pmen_0063 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain. (309 aa)    
Predicted Functional Partners:
AEF24201.1
PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0486 binding-protein-dependent transport systems inner membrane component.
 
 0.992
AEF21087.1
PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu5219 ABC transporter, membrane spanning protein (glycine betaine/L-proline).
 
 0.989
AEF21086.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: mes:Meso_2529 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core.
 
 0.988
AEF24200.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: pmy:Pmen_0487 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core.
 
 0.988
AEF24203.1
PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: pmy:Pmen_0484 substrate-binding region of ABC-type glycine betaine transport system.
 
 
 
0.656
AEF20121.1
TIGRFAM: Choline-sulfatase; KEGG: pmy:Pmen_0064 sulfatase; PFAM: Sulfatase.
 
     0.634
betI
HTH-type transcriptional regulator betI; Repressor involved in choline regulation of the bet genes.
 
     0.511
AEF21088.1
PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: atu:Atu5220 glycine betaine transporter periplasmic subunit.
  
  
  0.499
AEF24186.1
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ppu:PP_0315 Rieske (2Fe-2S) domain protein.
 
    0.435
AEF20123.1
PFAM: Dopa 4,5-dioxygenase; KEGG: pap:PSPA7_0035 dopa 4,5-dioxygenase.
       0.434
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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