STRINGSTRING
AEF20121.1 AEF20121.1 AEF22145.1 AEF22145.1 betA betA AEF20123.1 AEF20123.1 AEF20120.1 AEF20120.1 AEF22740.1 AEF22740.1 AEF20248.1 AEF20248.1 AEF23700.1 AEF23700.1 AEF20122.1 AEF20122.1 rpoB rpoB rpoA rpoA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AEF20121.1TIGRFAM: Choline-sulfatase; KEGG: pmy:Pmen_0064 sulfatase; PFAM: Sulfatase. (502 aa)    
Predicted Functional Partners:
AEF22145.1
KEGG: pfs:PFLU3249 putative radical SAM protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
 
 0.722
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
    
 0.696
AEF20123.1
PFAM: Dopa 4,5-dioxygenase; KEGG: pap:PSPA7_0035 dopa 4,5-dioxygenase.
 
     0.674
AEF20120.1
Choline ABC transporter, periplasmic binding protein; KEGG: pmy:Pmen_0063 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain.
 
     0.634
AEF22740.1
KEGG: pmy:Pmen_1690 hypothetical protein.
  
 
 0.620
AEF20248.1
PFAM: Sulphatase-modifying factor; KEGG: pfl:PFL_6075 hypothetical protein.
  
   0.605
AEF23700.1
KEGG: pmy:Pmen_4037 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor.
  
   0.605
AEF20122.1
KEGG: pmy:Pmen_0065 LysR family transcriptional regulator; TIGRFAM: Transcription factor, choline sulphate-utilisation, putative; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; Belongs to the LysR transcriptional regulatory family.
  
    0.590
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.569
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.545
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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