STRINGSTRING
AEF20123.1 AEF20123.1 AEF20122.1 AEF20122.1 AEF20121.1 AEF20121.1 AEF20124.1 AEF20124.1 AEF21350.1 AEF21350.1 AEF20120.1 AEF20120.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AEF20123.1PFAM: Dopa 4,5-dioxygenase; KEGG: pap:PSPA7_0035 dopa 4,5-dioxygenase. (119 aa)    
Predicted Functional Partners:
AEF20122.1
KEGG: pmy:Pmen_0065 LysR family transcriptional regulator; TIGRFAM: Transcription factor, choline sulphate-utilisation, putative; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; Belongs to the LysR transcriptional regulatory family.
       0.798
AEF20121.1
TIGRFAM: Choline-sulfatase; KEGG: pmy:Pmen_0064 sulfatase; PFAM: Sulfatase.
 
     0.674
AEF20124.1
Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: pap:PSPA7_1652 hypothetical protein.
       0.504
AEF21350.1
PFAM: NIPSNAP; KEGG: vap:Vapar_2502 NIPSNAP family containing protein.
  
     0.469
AEF20120.1
Choline ABC transporter, periplasmic binding protein; KEGG: pmy:Pmen_0063 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain.
       0.434
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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