AEF20127.1 protein (Pseudomonas fulva) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AEF20127.1

KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding. (203 aa)

Predicted Functional Partners:

AEF22517.1

0.776

AEF21222.1

0.758

AEF20917.1

0.541

AEF20126.1

0.533

AEF22724.1

0.528

AEF22969.1

0.448

AEF21061.1

0.447

AEF22748.1

0.442

AEF21531.1

0.413

AEF20765.1

0.412

Your Current Organism:

Pseudomonas fulva

NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEF20126.1	AEF20127.1	Psefu_0140	Psefu_0141	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pag:PLES_00571 putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	0.533
AEF20127.1	AEF20126.1	Psefu_0141	Psefu_0140	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pag:PLES_00571 putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.533
AEF20127.1	AEF20765.1	Psefu_0141	Psefu_0787	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	CsbD family protein; PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein; Belongs to the UPF0337 (CsbD) family.	0.412
AEF20127.1	AEF20917.1	Psefu_0141	Psefu_0939	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase.	0.541
AEF20127.1	AEF21061.1	Psefu_0141	Psefu_1083	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	PFAM: Helix-turn-helix, HxlR type; KEGG: maq:Maqu_3823 HxlR family transcriptional regulator.	0.447
AEF20127.1	AEF21222.1	Psefu_0141	Psefu_1245	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	KEGG: bte:BTH_I2720 hypothetical protein.	0.758
AEF20127.1	AEF21531.1	Psefu_0141	Psefu_1555	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	Aldehyde reductase; KEGG: pfo:Pfl01_3732 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain.	0.413
AEF20127.1	AEF22517.1	Psefu_0141	Psefu_2552	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	KEGG: pfo:Pfl01_4010 hypothetical protein.	0.776
AEF20127.1	AEF22724.1	Psefu_0141	Psefu_2760	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	KEGG: pmy:Pmen_0068 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain.	0.528
AEF20127.1	AEF22748.1	Psefu_0141	Psefu_2784	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	PFAM: Helix-turn-helix, HxlR type; KEGG: bcm:Bcenmc03_4119 HxlR family transcriptional regulator.	0.442
AEF20127.1	AEF22969.1	Psefu_0141	Psefu_3005	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	PFAM: Helix-turn-helix, HxlR type; KEGG: pwa:Pecwa_3206 transcriptional regulator, HxlR family.	0.448
AEF20765.1	AEF20127.1	Psefu_0787	Psefu_0141	CsbD family protein; PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein; Belongs to the UPF0337 (CsbD) family.	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	0.412
AEF20765.1	AEF20917.1	Psefu_0787	Psefu_0939	CsbD family protein; PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein; Belongs to the UPF0337 (CsbD) family.	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase.	0.429
AEF20765.1	AEF22517.1	Psefu_0787	Psefu_2552	CsbD family protein; PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein; Belongs to the UPF0337 (CsbD) family.	KEGG: pfo:Pfl01_4010 hypothetical protein.	0.600
AEF20917.1	AEF20127.1	Psefu_0939	Psefu_0141	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase.	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	0.541
AEF20917.1	AEF20765.1	Psefu_0939	Psefu_0787	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase.	CsbD family protein; PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein; Belongs to the UPF0337 (CsbD) family.	0.429
AEF20917.1	AEF22517.1	Psefu_0939	Psefu_2552	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase.	KEGG: pfo:Pfl01_4010 hypothetical protein.	0.751
AEF21061.1	AEF20127.1	Psefu_1083	Psefu_0141	PFAM: Helix-turn-helix, HxlR type; KEGG: maq:Maqu_3823 HxlR family transcriptional regulator.	KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding.	0.447
AEF21061.1	AEF22748.1	Psefu_1083	Psefu_2784	PFAM: Helix-turn-helix, HxlR type; KEGG: maq:Maqu_3823 HxlR family transcriptional regulator.	PFAM: Helix-turn-helix, HxlR type; KEGG: bcm:Bcenmc03_4119 HxlR family transcriptional regulator.	0.751
AEF21061.1	AEF22969.1	Psefu_1083	Psefu_3005	PFAM: Helix-turn-helix, HxlR type; KEGG: maq:Maqu_3823 HxlR family transcriptional regulator.	PFAM: Helix-turn-helix, HxlR type; KEGG: pwa:Pecwa_3206 transcriptional regulator, HxlR family.	0.735