Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF20157.1 | AEF20158.1 | Psefu_0171 | Psefu_0172 | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | KEGG: pmy:Pmen_4190 hypothetical protein. | 0.516 |
AEF20157.1 | AEF20391.1 | Psefu_0171 | Psefu_0408 | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_0527 TetR family transcriptional regulator. | 0.647 |
AEF20157.1 | AEF23121.1 | Psefu_0171 | Psefu_3158 | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | ATP-binding region ATPase domain protein; KEGG: pfl:PFL_4413 sensory box histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Sodium/solute symporter; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain. | 0.404 |
AEF20157.1 | AEF24295.1 | Psefu_0171 | Psefu_4343 | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | PFAM: FAD dependent oxidoreductase; Glucose-methanol-choline oxidoreductase, N-terminal; KEGG: hse:Hsero_3758 choline dehydrogenase. | 0.415 |
AEF20157.1 | coaD | Psefu_0171 | Psefu_0170 | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.561 |
AEF20158.1 | AEF20157.1 | Psefu_0172 | Psefu_0171 | KEGG: pmy:Pmen_4190 hypothetical protein. | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | 0.516 |
AEF20158.1 | coaD | Psefu_0172 | Psefu_0170 | KEGG: pmy:Pmen_4190 hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.418 |
AEF20391.1 | AEF20157.1 | Psefu_0408 | Psefu_0171 | Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_0527 TetR family transcriptional regulator. | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | 0.647 |
AEF23121.1 | AEF20157.1 | Psefu_3158 | Psefu_0171 | ATP-binding region ATPase domain protein; KEGG: pfl:PFL_4413 sensory box histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Sodium/solute symporter; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain. | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | 0.404 |
AEF24295.1 | AEF20157.1 | Psefu_4343 | Psefu_0171 | PFAM: FAD dependent oxidoreductase; Glucose-methanol-choline oxidoreductase, N-terminal; KEGG: hse:Hsero_3758 choline dehydrogenase. | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | 0.415 |
coaD | AEF20157.1 | Psefu_0170 | Psefu_0171 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family. | 0.561 |
coaD | AEF20158.1 | Psefu_0170 | Psefu_0172 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | KEGG: pmy:Pmen_4190 hypothetical protein. | 0.418 |