Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF20767.1 | AEF20768.1 | Psefu_0789 | Psefu_0790 | Threonine ammonia-lyase; KEGG: pmy:Pmen_3749 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit. | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | 0.575 |
AEF20767.1 | amn | Psefu_0789 | Psefu_0791 | Threonine ammonia-lyase; KEGG: pmy:Pmen_3749 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit. | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | 0.418 |
AEF20768.1 | AEF20767.1 | Psefu_0790 | Psefu_0789 | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | Threonine ammonia-lyase; KEGG: pmy:Pmen_3749 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit. | 0.575 |
AEF20768.1 | AEF21704.1 | Psefu_0790 | Psefu_1730 | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: aav:Aave_1345 pyridoxal kinase; PFAM: Carbohydrate/purine kinase; Belongs to the pyridoxine kinase family. | 0.473 |
AEF20768.1 | amn | Psefu_0790 | Psefu_0791 | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | 0.608 |
AEF21704.1 | AEF20768.1 | Psefu_1730 | Psefu_0790 | TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: aav:Aave_1345 pyridoxal kinase; PFAM: Carbohydrate/purine kinase; Belongs to the pyridoxine kinase family. | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | 0.473 |
amn | AEF20767.1 | Psefu_0791 | Psefu_0789 | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | Threonine ammonia-lyase; KEGG: pmy:Pmen_3749 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit. | 0.418 |
amn | AEF20768.1 | Psefu_0791 | Psefu_0790 | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR. | 0.608 |