STRINGSTRING
AEF20986.1 AEF20986.1 AEF20387.1 AEF20387.1 AEF23908.1 AEF23908.1 AEF24111.1 AEF24111.1 AEF20224.1 AEF20224.1 AEF21799.1 AEF21799.1 AEF21096.1 AEF21096.1 AEF21615.1 AEF21615.1 AEF23404.1 AEF23404.1 AEF23203.1 AEF23203.1 ligB ligB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF20986.1PFAM: Protein of unknown function DUF1282; KEGG: yen:YE2135 hypothetical protein. (203 aa)    
Predicted Functional Partners:
AEF20387.1
PFAM: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; KEGG: pmy:Pmen_0285 anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family.
  
     0.715
AEF23908.1
SpoVR family protein; PFAM: Sporulation stage V, protein R; KEGG: pmy:Pmen_4019 SpoVR family protein.
   
  
 0.642
AEF24111.1
PFAM: Protein of unknown function DUF1249; KEGG: pag:PLES_53561 hypothetical protein.
  
     0.556
AEF20224.1
PFAM: Protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein.
  
     0.533
AEF21799.1
PFAM: Protein of unknown function DUF1315; KEGG: pmy:Pmen_2941 hypothetical protein.
  
     0.515
AEF21096.1
KEGG: pmy:Pmen_3549 nucleoid-associated protein NdpA; HAMAP: Nucleoid-associated protein NdpA; PFAM: Nucleoid-associated protein NdpA.
  
     0.500
AEF21615.1
PFAM: Stress-induced protein, KGG, repeat; KEGG: psa:PST_3123 general stress protein.
  
     0.497
AEF23404.1
PFAM: Stress-induced protein, KGG, repeat; KEGG: pmy:Pmen_2359 hypothetical protein.
  
     0.487
AEF23203.1
PFAM: Anti sigma-E protein RseA, N-terminal; Anti sigma-E protein RseA, C-terminal; KEGG: pfo:Pfl01_1363 anti sigma-E protein, RseA.
  
     0.444
ligB
DNA ligase (NAD(+)); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
  
     0.432
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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