node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF20649.1 | AEF21124.1 | Psefu_0671 | Psefu_1147 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.628 |
AEF20649.1 | AEF22854.1 | Psefu_0671 | Psefu_2890 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | 0.609 |
AEF20649.1 | AEF23727.1 | Psefu_0671 | Psefu_3770 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: pst:PSPTO_2478 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain. | 0.715 |
AEF20649.1 | dnaG | Psefu_0671 | Psefu_3959 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.495 |
AEF20649.1 | mfd | Psefu_0671 | Psefu_2908 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.412 |
AEF20649.1 | polA | Psefu_0671 | Psefu_4313 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.805 |
AEF20649.1 | topA | Psefu_0671 | Psefu_2915 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.962 |
AEF21123.1 | AEF21124.1 | Psefu_1146 | Psefu_1147 | YaeQ family protein; PFAM: YaeQ; KEGG: pmy:Pmen_3382 YaeQ family protein. | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.765 |
AEF21124.1 | AEF20649.1 | Psefu_1147 | Psefu_0671 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.628 |
AEF21124.1 | AEF21123.1 | Psefu_1147 | Psefu_1146 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | YaeQ family protein; PFAM: YaeQ; KEGG: pmy:Pmen_3382 YaeQ family protein. | 0.765 |
AEF21124.1 | AEF22854.1 | Psefu_1147 | Psefu_2890 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | 0.623 |
AEF21124.1 | AEF23727.1 | Psefu_1147 | Psefu_3770 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: pst:PSPTO_2478 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain. | 0.617 |
AEF21124.1 | dnaG | Psefu_1147 | Psefu_3959 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.602 |
AEF21124.1 | mfd | Psefu_1147 | Psefu_2908 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.630 |
AEF21124.1 | murE | Psefu_1147 | Psefu_3570 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.597 |
AEF21124.1 | polA | Psefu_1147 | Psefu_4313 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.653 |
AEF21124.1 | topA | Psefu_1147 | Psefu_2915 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.654 |
AEF21124.1 | xseA | Psefu_1147 | Psefu_1413 | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.579 |
AEF22854.1 | AEF20649.1 | Psefu_2890 | Psefu_0671 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.609 |
AEF22854.1 | AEF21124.1 | Psefu_2890 | Psefu_1147 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.623 |