STRINGSTRING
xseA xseA xseB xseB AEF21388.1 AEF21388.1 folD folD polA polA nusG nusG AEF23564.1 AEF23564.1 AEF23729.1 AEF23729.1 AEF21390.1 AEF21390.1 priA priA AEF22358.1 AEF22358.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
xseAExodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (462 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
 0.998
AEF21388.1
PFAM: Peptidase M23; KEGG: pmy:Pmen_3491 peptidase M23B.
       0.762
folD
Bifunctional protein folD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
 
    0.758
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.727
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination.
  
  
 0.699
AEF23564.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
   
 0.628
AEF23729.1
Geranyltranstransferase; KEGG: pmy:Pmen_3841 farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.624
AEF21390.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfo:Pfl01_2782 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.623
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
     0.591
AEF22358.1
PFAM: Polyprenyl synthetase; KEGG: esa:ESA_00347 hypothetical protein; Belongs to the FPP/GGPP synthase family.
 
  
 0.591
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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