node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF20386.1 | queA | Psefu_0403 | Psefu_3313 | HemY domain protein; PFAM: HemY, N-terminal; KEGG: ppg:PputGB1_0214 HemY domain-containing protein. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.565 |
AEF20386.1 | ruvB | Psefu_0403 | Psefu_1529 | HemY domain protein; PFAM: HemY, N-terminal; KEGG: ppg:PputGB1_0214 HemY domain-containing protein. | Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.819 |
AEF20663.1 | AEF22854.1 | Psefu_0685 | Psefu_2890 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | 0.612 |
AEF20663.1 | polA | Psefu_0685 | Psefu_4313 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.747 |
AEF20663.1 | ruvA | Psefu_0685 | Psefu_1528 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.546 |
AEF20663.1 | ruvB | Psefu_0685 | Psefu_1529 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.629 |
AEF21506.1 | ruvA | Psefu_1530 | Psefu_1528 | KEGG: pmy:Pmen_1273 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.686 |
AEF21506.1 | ruvB | Psefu_1530 | Psefu_1529 | KEGG: pmy:Pmen_1273 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily. | Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.678 |
AEF21506.1 | ruvC | Psefu_1530 | Psefu_1527 | KEGG: pmy:Pmen_1273 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily. | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.555 |
AEF21506.1 | tolQ | Psefu_1530 | Psefu_1531 | KEGG: pmy:Pmen_1273 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily. | Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.881 |
AEF22300.1 | AEF22854.1 | Psefu_2333 | Psefu_2890 | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | 0.696 |
AEF22300.1 | polA | Psefu_2333 | Psefu_4313 | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.712 |
AEF22300.1 | ruvA | Psefu_2333 | Psefu_1528 | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.541 |
AEF22300.1 | ruvB | Psefu_2333 | Psefu_1529 | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.611 |
AEF22300.1 | ruvC | Psefu_2333 | Psefu_1527 | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.548 |
AEF22854.1 | AEF20663.1 | Psefu_2890 | Psefu_0685 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.612 |
AEF22854.1 | AEF22300.1 | Psefu_2890 | Psefu_2333 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma. | 0.696 |
AEF22854.1 | ruvA | Psefu_2890 | Psefu_1528 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.558 |
AEF22854.1 | ruvB | Psefu_2890 | Psefu_1529 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.614 |
AEF22854.1 | ruvC | Psefu_2890 | Psefu_1527 | TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like. | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.501 |