STRINGSTRING
AEF21977.1 AEF21977.1 der der AEF21975.1 AEF21975.1 AEF22845.1 AEF22845.1 cmk cmk AEF21756.1 AEF21756.1 AEF21974.1 AEF21974.1 rlmN rlmN AEF20174.1 AEF20174.1 AEF20255.1 AEF20255.1 AEF22485.1 AEF22485.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AEF21977.1TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: pmy:Pmen_1841 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4; Belongs to the pseudouridine synthase RsuA family. (384 aa)    
Predicted Functional Partners:
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.807
AEF21975.1
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.800
AEF22845.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.761
cmk
PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: pmy:Pmen_1853 cytidylate kinase.
  
 0.760
AEF21756.1
PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: pmy:Pmen_1232 ribosomal large subunit pseudouridine synthase A.
   
 
 0.659
AEF21974.1
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
  
 0.618
rlmN
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.561
AEF20174.1
KEGG: pmy:Pmen_4384 exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.546
AEF20255.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: syd:Syncc9605_0661 exodeoxyribonuclease III.
  
    0.546
AEF22485.1
Exodeoxyribonuclease III; TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; KEGG: pap:PSPA7_2692 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.546
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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