STRINGSTRING
AEF22226.1 AEF22226.1 dnaQ dnaQ rnhA rnhA AEF21522.1 AEF21522.1 AEF23202.1 AEF23202.1 AEF20582.1 AEF20582.1 AEF22229.1 AEF22229.1 AEF23084.1 AEF23084.1 AEF23650.1 AEF23650.1 bamE bamE ftsQ ftsQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF22226.1PFAM: Methyltransferase type 11; KEGG: pmy:Pmen_2065 hypothetical protein. (253 aa)    
Predicted Functional Partners:
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
 
  
 0.736
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.685
AEF21522.1
KEGG: pmy:Pmen_1664 hypothetical protein.
  
     0.656
AEF23202.1
KEGG: pmy:Pmen_1469 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB.
  
     0.642
AEF20582.1
KEGG: pmy:Pmen_0781 signaling modulator of AmpD, AmpE.
  
     0.638
AEF22229.1
KEGG: pmy:Pmen_2068 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal.
 
     0.603
AEF23084.1
KEGG: pmy:Pmen_2891 Arc domain-containing protein.
  
     0.556
AEF23650.1
TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: pmy:Pmen_0861 membrane protein-like protein.
  
     0.550
bamE
SmpA/OmlA domain-containing protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.512
ftsQ
Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
  
     0.472
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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