node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF22293.1 | AEF22295.1 | Psefu_2326 | Psefu_2328 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family. | 0.686 |
AEF22293.1 | clpS | Psefu_2326 | Psefu_2327 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.666 |
AEF22293.1 | rplO | Psefu_2326 | Psefu_0659 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.440 |
AEF22293.1 | rpmE | Psefu_2326 | Psefu_0417 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.490 |
AEF22293.1 | rpmJ | Psefu_2326 | Psefu_0661 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: pmy:Pmen_3888 50S ribosomal protein L36; HAMAP: Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.464 |
AEF22293.1 | rpsE | Psefu_2326 | Psefu_0657 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.422 |
AEF22293.1 | rpsL | Psefu_2326 | Psefu_0635 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.477 |
AEF22293.1 | rpsQ | Psefu_2326 | Psefu_0649 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.424 |
AEF22293.1 | rpsT | Psefu_2326 | Psefu_0736 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.427 |
AEF22293.1 | rpsU | Psefu_2326 | Psefu_3958 | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: psa:PST_0714 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.424 |
AEF22295.1 | AEF22293.1 | Psefu_2328 | Psefu_2326 | TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family. | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 0.686 |
AEF22295.1 | clpS | Psefu_2328 | Psefu_2327 | TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family. | ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.980 |
clpS | AEF22293.1 | Psefu_2327 | Psefu_2326 | ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 0.666 |
clpS | AEF22295.1 | Psefu_2327 | Psefu_2328 | ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family. | 0.980 |
rplO | AEF22293.1 | Psefu_0659 | Psefu_2326 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein. | 0.440 |
rplO | rpmE | Psefu_0659 | Psefu_0417 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.863 |
rplO | rpmJ | Psefu_0659 | Psefu_0661 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: pmy:Pmen_3888 50S ribosomal protein L36; HAMAP: Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.993 |
rplO | rpsE | Psefu_0659 | Psefu_0657 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.997 |
rplO | rpsL | Psefu_0659 | Psefu_0635 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.983 |
rplO | rpsQ | Psefu_0659 | Psefu_0649 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.990 |