AEF23182.1 protein (Pseudomonas fulva) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AEF23182.1

KEGG: rce:RC1_4076 ABC transporter, periplasmic substrate-binding protein, putative. (258 aa)

Predicted Functional Partners:

AEF20372.1

0.764

AEF24041.1

0.760

AEF20536.1

0.758

AEF22953.1

0.731

AEF24099.1

0.730

AEF22417.1

0.721

AEF23865.1

0.705

AEF23866.1

0.667

AEF24349.1

0.645

AEF24348.1

0.641

Your Current Organism:

Pseudomonas fulva

NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEF20372.1	AEF20536.1	Psefu_0389	Psefu_0554	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: pst:PSPTO_1585 hypothetical protein.	0.765
AEF20372.1	AEF22417.1	Psefu_0389	Psefu_2451	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	0.747
AEF20372.1	AEF22953.1	Psefu_0389	Psefu_2989	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: pmy:Pmen_3190 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.744
AEF20372.1	AEF23182.1	Psefu_0389	Psefu_3220	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: rce:RC1_4076 ABC transporter, periplasmic substrate-binding protein, putative.	0.764
AEF20372.1	AEF23865.1	Psefu_0389	Psefu_3909	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: pmy:Pmen_4249 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.712
AEF20372.1	AEF23866.1	Psefu_0389	Psefu_3910	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	PFAM: Extracellular solute-binding protein, family 3; KEGG: nve:NEMVE_v1g223466 hypothetical protein.	0.661
AEF20372.1	AEF24041.1	Psefu_0389	Psefu_4086	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: pmy:Pmen_0687 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.763
AEF20372.1	AEF24099.1	Psefu_0389	Psefu_4144	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: pmy:Pmen_0477 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.758
AEF20372.1	AEF24348.1	Psefu_0389	Psefu_4396	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	PFAM: Extracellular solute-binding protein, family 3; KEGG: nve:NEMVE_v1g225839 hypothetical protein.	0.661
AEF20372.1	AEF24349.1	Psefu_0389	Psefu_4397	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	KEGG: nve:NEMVE_v1g225839 hypothetical protein.	0.656
AEF20536.1	AEF20372.1	Psefu_0554	Psefu_0389	KEGG: pst:PSPTO_1585 hypothetical protein.	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.765
AEF20536.1	AEF22953.1	Psefu_0554	Psefu_2989	KEGG: pst:PSPTO_1585 hypothetical protein.	KEGG: pmy:Pmen_3190 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.694
AEF20536.1	AEF23182.1	Psefu_0554	Psefu_3220	KEGG: pst:PSPTO_1585 hypothetical protein.	KEGG: rce:RC1_4076 ABC transporter, periplasmic substrate-binding protein, putative.	0.758
AEF20536.1	AEF24099.1	Psefu_0554	Psefu_4144	KEGG: pst:PSPTO_1585 hypothetical protein.	KEGG: pmy:Pmen_0477 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.740
AEF22417.1	AEF20372.1	Psefu_2451	Psefu_0389	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	KEGG: pap:PSPA7_6012 putative lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.747
AEF22417.1	AEF22953.1	Psefu_2451	Psefu_2989	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	KEGG: pmy:Pmen_3190 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.712
AEF22417.1	AEF23182.1	Psefu_2451	Psefu_3220	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	KEGG: rce:RC1_4076 ABC transporter, periplasmic substrate-binding protein, putative.	0.721
AEF22417.1	AEF24099.1	Psefu_2451	Psefu_4144	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	KEGG: pmy:Pmen_0477 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.	0.652
AEF22417.1	AEF24348.1	Psefu_2451	Psefu_4396	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	PFAM: Extracellular solute-binding protein, family 3; KEGG: nve:NEMVE_v1g225839 hypothetical protein.	0.772
AEF22417.1	AEF24349.1	Psefu_2451	Psefu_4397	PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein.	KEGG: nve:NEMVE_v1g225839 hypothetical protein.	0.772