STRINGSTRING
AEF23436.1 AEF23436.1 AEF21954.1 AEF21954.1 AEF22542.1 AEF22542.1 AEF24312.1 AEF24312.1 AEF22650.1 AEF22650.1 dapE dapE AEF23435.1 AEF23435.1 AEF22877.1 AEF22877.1 AEF24123.1 AEF24123.1 AEF22237.1 AEF22237.1 AEF20950.1 AEF20950.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF23436.1KEGG: pmy:Pmen_3068 hypothetical protein. (123 aa)    
Predicted Functional Partners:
AEF21954.1
yecA family protein; TIGRFAM: Uncharacterised protein family UPF0149; KEGG: pmy:Pmen_1811 YecA family protein; Belongs to the UPF0149 family.
  
     0.773
AEF22542.1
KEGG: pmy:Pmen_2458 hypothetical protein.
  
     0.761
AEF24312.1
KEGG: pmy:Pmen_4462 nucleic acid binding protein; TIGRFAM: Conserved hypothetical protein CHP02443; PFAM: Conserved hypothetical protein CHP02443.
  
    0.756
AEF22650.1
KEGG: pmy:Pmen_1916 hypothetical protein.
  
     0.737
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.734
AEF23435.1
KEGG: pmy:Pmen_3067 rRNA (guanine-N(1)-)-methyltransferase; PFAM: Methyltransferase type 11.
       0.734
AEF22877.1
KEGG: pmy:Pmen_1585 hypothetical protein.
  
     0.731
AEF24123.1
LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: pmy:Pmen_0596 LmbE family protein.
  
     0.711
AEF22237.1
PFAM: SCP2 sterol-binding domain; KEGG: pmy:Pmen_2532 sterol-binding domain-containing protein.
  
     0.697
AEF20950.1
KEGG: pmy:Pmen_3313 H-NS family protein MvaT.
  
     0.695
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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