STRINGSTRING
AGA84628.1 AGA84628.1 AGA84630.1 AGA84630.1 AGA84631.1 AGA84631.1 AGA87312.1 AGA87312.1 AGA84629.1 AGA84629.1 AGA84773.1 AGA84773.1 def def AGA86106.1 AGA86106.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Experiments
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Textmining
[Homology]
Score
AGA84628.1PFAM: Tetratricopeptide repeat. (105 aa)    
Predicted Functional Partners:
AGA84630.1
PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; ectoine/hydroxyectoine ABC transporter, permease protein EhuD.
       0.534
AGA84631.1
PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; ectoine/hydroxyectoine ABC transporter, permease protein EhuC.
       0.534
AGA87312.1
Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23; LysM domain; manually curated.
   
 
 0.533
AGA84629.1
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein.
       0.488
AGA84773.1
Membrane-bound metallopeptidase; PFAM: Peptidase family M23.
   
   0.487
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.427
AGA86106.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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