STRINGSTRING
AGA84722.1 AGA84722.1 AGA84723.1 AGA84723.1 mdcB mdcB mdcC mdcC mdcG mdcG AGA84719.1 AGA84719.1 AGA84715.1 AGA84715.1 AGA84718.1 AGA84718.1 AGA84721.1 AGA84721.1 AGA84725.1 AGA84725.1 AGA88398.1 AGA88398.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGA84722.1PFAM: Malonate transporter MadL subunit; TIGRFAM: malonate transporter, MadL subunit. (140 aa)    
Predicted Functional Partners:
AGA84723.1
PFAM: Malonate/sodium symporter MadM subunit; TIGRFAM: malonate transporter, MadM subunit.
 
   
 0.953
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
    0.933
mdcC
Malonate decarboxylase acyl carrier protein; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
    0.933
mdcG
Malonate decarboxylase holo-(acyl-carrier-protein) synthase; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family.
 
    0.911
AGA84719.1
PFAM: Malonate decarboxylase gamma subunit (MdcE); TIGRFAM: malonate decarboxylase, gamma subunit.
 
    0.859
AGA84715.1
TIGRFAM: malonate decarboxylase, alpha subunit.
 
  
 0.856
AGA84718.1
PFAM: Carboxyl transferase domain; TIGRFAM: malonate decarboxylase, beta subunit.
 
    0.850
AGA84721.1
Malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; malonate decarboxylase, epsilon subunit.
 
  
 0.754
AGA84725.1
Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.645
AGA88398.1
Na+/citrate symporter; PFAM: 2-hydroxycarboxylate transporter family; TIGRFAM: citrate carrier protein, CCS family.
  
     0.429
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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