STRINGSTRING
AGA84734.1 AGA84734.1 AGA84740.1 AGA84740.1 AGA84739.1 AGA84739.1 AGA84736.1 AGA84736.1 AGA84738.1 AGA84738.1 AGA84735.1 AGA84735.1 AGA84733.1 AGA84733.1 AGA84737.1 AGA84737.1 AGA84745.1 AGA84745.1 AGA84743.1 AGA84743.1 AGA84746.1 AGA84746.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA84734.1LysM domain-containing protein; PFAM: LysM domain. (415 aa)    
Predicted Functional Partners:
AGA84740.1
PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family.
 
  
 0.864
AGA84739.1
PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family.
 
   
 0.818
AGA84736.1
Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; Phage late control gene D protein (GPD); TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein.
     
 0.810
AGA84738.1
Type VI secretion ATPase, ClpV1 family; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
     
 0.780
AGA84735.1
Hypothetical protein.
       0.776
AGA84733.1
Hypothetical protein.
       0.773
AGA84737.1
Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain.
 
     0.773
AGA84745.1
PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.764
AGA84743.1
Hypothetical protein; PFAM: PAAR motif; Uncharacterized conserved protein (DUF2235).
 
   
 0.749
AGA84746.1
PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.742
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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