STRINGSTRING
AGA84897.1 AGA84897.1 AGA88196.1 AGA88196.1 AGA87778.1 AGA87778.1 AGA87777.1 AGA87777.1 AGA88671.1 AGA88671.1 AGA88192.1 AGA88192.1 AGA84896.1 AGA84896.1 AGA87865.1 AGA87865.1 AGA88194.1 AGA88194.1 AGA88195.1 AGA88195.1 AGA87780.1 AGA87780.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
AGA84897.1PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (381 aa)    
Predicted Functional Partners:
AGA88196.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
  
 0.832
AGA87778.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.823
AGA87777.1
Prepilin signal peptidase PulO-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.818
AGA88671.1
PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
 
   
 0.803
AGA88192.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
  
   
 0.742
AGA84896.1
Pilus retraction ATPase PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
  
0.700
AGA87865.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
   
 0.692
AGA88194.1
PFAM: Pilus assembly protein, PilO.
 
  
 0.651
AGA88195.1
PFAM: Fimbrial assembly protein (PilN).
  
  
 0.643
AGA87780.1
PFAM: Prokaryotic N-terminal methylation motif; Pilin (bacterial filament); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; Belongs to the N-Me-Phe pilin family.
  
   
 0.560
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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